Genome Informatics Research Seminar (2S)

Stoye

Summer 2021

Monday 14-16 online

In this seminar, current research of the Genome Informatics group is reported.

(In dieser Veranstaltung wird in Vorträgen über aktuelle Themen aus der Forschung der Arbeitsgruppe Genominformatik berichtet.)

This class will be given as a live video conference. Details will be distributed to registered participants short before the first class on April 12.

Date	Topic	Name
12.04.2021	Organization of the seminar	Jens S
19.04.2021	Exploiting dynamic machine learning for tissue-specific expression prediction based on regulatory regions	Moritz H
26.04.2021 at 13 c.t.	CeBiTec Colloquium (13 c.t.): Engineering spatial organization in biomimetic systems	Henrike Niederholtmeyer
03.05.2021	Alignment-free Phylogenomics Using Amino Acid Sequences	Marco S
10.05.2021	–	–
17.05.2021	–	–
24.05.2021	(Whit Monday)	–
31.05.2021 at 15:00	Error correction of UMI (unique molecular identifier) tagged HTS immune repertoires	Pina K
07.06.2021	–	–
14.06.2021 at 15 c.t.	phasebook: haplotype-aware de novo assembly of diploid genomes from long reads	Xiao L
21.06.2021 at 15:00	Parsing the language of genomes using deep transformers	Maren K
28.06.2021 at 15:00	Strainline: full-length de novo viral haplotype reconstruction from noisy long reads	Xiongbin K
05.07.2021 at 10 s.t. and at 14 c.t.	Bachelor Theses GI morning: Franziska N (Pangenomics: Core Detection), Leonie B (Comparative Genomics: DCJ Distance), Fabian K (Comparative Genomics: Generator Construction) afternoon: Rebecca P (Phylogenomics: k-mer Entropy), Ann-Cathrin G (Phylogenomics: Counting k-mers)
12.07.2021	–	–
19.07.2021 at 14 c.t.	Developing a standard interface for sets of k-mer sets index structures	Andreas R
13.09.2021	The Potential of Family-free Rearrangements Towards Gene Orthology Inference	Marília D V B

later: Jens S, Sebastian J, Michael B, Leonard B, Tizian Sch