Combinatorics of Genome Rearrangements (Seminar in SS 2010)
392171 |
Marilia Braga |
Mi 14-16 |
U10-146 |
Office Hours:
every Wednesday from 16.00 to 17.00 in room U10-141
Calendar:
14.04.2010 |
Introduction |
Marilia |
21.04.2010 |
Organization |
Marilia |
28.04.2010 |
--- |
|
05.05.2010 |
Common Intervals |
Nicole & Svea |
12.05.2010 |
DCJ |
Julia & Linda |
12.05.2010 |
Genome Halving under DCJ |
Benedikt & Sebastian |
19.05.2010 |
--- |
Dies academicus |
26.05.2010 |
Block-interchanges |
Denis & Lisa-Maria |
02.06.2010 |
Sorting by reversals |
Lina, Maureen & Farrin |
09.06.2010 |
Perfect DCJ rearrangements |
Niclas & Hakan |
09.06.2010 |
Perfect sorting by reversals |
Robert & Henry |
16.06.2010 |
Perfect reversal median |
Christian, Philipp & Ansgar |
23.06.2010 |
Multichromosomal genome median and halving problems |
Sarah, Konstantin & Stanislaw |
30.06.2010 |
--- |
|
07.07.2010 |
Sorting a bridge hand |
Dominic & Erwin |
14.07.2010 |
On the Toric Graph as a Tool to Handle the Problem of Sorting by Transpositions |
Nina & Jennifer |
21.07.2010 |
Deadline for the first version of the report |
All |
Rules:
Oral presentations take 20+20 minutes (groups of 2) or 15+15+15 minutes (groups of 3). Every group writes a written summary of 15 pages (groups of 2) or 18 pages (groups of 3). The first version has to be handed in by July 21, 2010.
Topics:
In this seminar we will see combinatoric approaches for problems involving large scale genome rearrangements, such as inversions, fusions, fissions, translocations, block-interchanges and transpositions:
- Genomic distance and sorting
- Genome halving
- Median of three genomes
- Common intervals
- ...
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